Publications

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2023

Luo, Shiqi; Ru, Jinlong; Mirzaei, Mohammadali Khan; Xue, Jinling; Peng, Xue; Ralser, Anna; Luque, Raquel Mejías; Gerhard, Markus; Deng, Li

Gut virome profiling identifies an association between temperate phages and colorectal cancer promoted by Helicobacter pylori infection Journal Article

In: Gut Microbes, vol. 15, iss. 2, pp. 2257291, 2023.

Abstract | Links | BibTeX | Tags: Project 05, WP 1.1 Virus identification, WP 1.2 Host prediction

Ru, Jinlong; Mirzaei, Mohammadali Khan; Xue, Jinling; Peng, Xue; Deng, Li

ViroProfiler: a containerized bioinformatics pipeline for viral metagenomic data analysis Journal Article

In: Gut Microbes, vol. 15, iss. 1, pp. 2192522, 2023.

Abstract | Links | BibTeX | Tags: Project 05, WP 1.1 Virus identification, WP 1.2 Host prediction

2022

Peng, Xue; Ru, Jinlong; Mirzaei, Mohammadali Khan; Deng, Li

Replidec - Use naive Bayes classifier to identify virus lifecycle from metagenomics data Journal Article

In: bioRxiv, 2022.

Abstract | Links | BibTeX | Tags: Project 05, WP 1.2 Host prediction

2021

Goettsch, Winfried; Beerenwinkel, Niko; Deng, Li; Dölken, Lars; Dutilh, Bas E.; Erhard, Florian; Kaderali, Lars; von Kleist, Max; Marquet, Roland; Matthijnssens, Jelle; McCallin, Shawna; McMahon, Dino; Rattei, Thomas; van Rij, Ronald P.; Robertson, David L.; Schwemmle, Martin; Stern-Ginossar, Noam; Marz, Manja

ITN -- VIROINF: Understanding (Harmful) Virus-Host Interactions by Linking Virology and Bioinformatics Journal Article

In: Viruses, vol. 13, no. 5, pp. 766, 2021.

Abstract | Links | BibTeX | Tags: Project 01, Project 02, Project 03, Project 04, Project 05, Project 06, Project 07, Project 08, Project 09, Project 10, Project 11, Project 12, Project 13, Project 14, Project 15, WP 1.1 Virus identification, WP 1.2 Host prediction, WP 1.3 Virus-host interactions, WP 1.4 Virus regulation, WP 1.5 Virus products, WP 2.1 Microevolution: Virus quasispecies, WP 2.2 Macroevolution: Natural selection of viruses